nanaxleague.blogg.se - Asreml r package

ASREML R PACKAGE INSTALL
ASREML R PACKAGE SOFTWARE
ASREML R PACKAGE LICENSE
ASREML R PACKAGE DOWNLOAD
ASREML R PACKAGE MAC

The results of our study could provide new perspectives on breeding high-yielding maize varieties. Several biological pathways related to the regulation of seed growth, gibberellin-mediated signaling pathway, and long-day photoperiodism were enriched. Pathway enrichment analysis was also performed to explore the biological significance and functions of these candidate genes. A total of 224 genes annotated by SNPs at the top five of each GWAS method and detected by multiple GWAS methods were regarded as having high reliability. Analysis of GWAS results identified a total of 1,103 unique candidate genes annotated by 678 significant SNPs ( P value < 1.28e–6). Genome-wide association studies (GWAS) were conducted on the total aboveground biomass and the DM of different organs. Further, the properties of these phenotypic traits were analyzed. In this study, the aboveground dry matter (DM), the DM of different organs, and partition coefficients of a maize association mapping panel of 412 inbred lines were evaluated at the third and sixth leaf stages (V3 and V6). 2Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing, Chinaĭry matter accumulation and partitioning during the early phases of development could significantly affect crop growth and productivity.1Beijing Key Laboratory of Digital Plant, Beijing Research Center for Information Technology in Agriculture, National Engineering Research Center for Information Technology in Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China.As a quick hack you can also include Sys.setenv(ASREML_LICENSE_FILE="/Applications/asreml3/bin") at the beginning of your R script (assuming you put ASReml in this directory).Xianju Lu 1†, Jinglu Wang 1†, Yongjian Wang 1, Weiliang Wen 1, Ying Zhang 1, Jianjun Du 1, Yanxin Zhao 2 and Xinyu Guo 1* If ASReml-R pesters about a missing license, check using "Sys.getenv()" that this environment variable is properly set, and that a valid "asreml.lic" file is really found there.

ASREML R PACKAGE LICENSE

This file should contain the single line ASREML_LICENSE_FILE='/Applications/asreml3/bin/asreml.lic' (of course this needs to be adapted if you installed ASReml in another directory, or your license file has a different file name). What should work though is to put a file named ".Renviron" in your home directory. There are several options where you can set it in FreeBSD (the Unix underlying MacOS X), including a ".profile" file in your home directory, but it seems not all are considered depending on how R is started from within RStudio.

ASREML R PACKAGE MAC

If you have a Mac and it says the license is not found (especially when using RStudio), you have to make sure an environment variable is set that tells ASReml where the license file is located.

From R, use library(asreml) to load the R package providing the interface glue.

This has the advantage that you can use asreml from everywhere, without VPN, as long as you have an internet connection.

I am running the license server outside the university network.

This file needs to be saved in the directory where ASReml resides, or in your home directory. In return, I expect a contribution to the license costs, which will depend on how many people use the license. As of 2018, I have purchased a pool of floating licenses, which means that the total number of simultaneous users is limited, but not the total number of installations.

ASREML R PACKAGE INSTALL

However, only install the package this way if you know what you are doing. The advantage will be that all users on this computer will have this R package available. The location where the library is installed may need to be adapted, and you may need superuser rights.

From a terminal, under OS X or Linux, you can also use "R CMD INSTALL -l /usr/lib/R/site-library asreml_3.0_R_", or "R CMD INSTALL asreml_3.0_R_".

Under Windows and newer R versions, you may have to add the option type="binary"

Everything should also work by using install.packages(path_to_your_asreml-R.zip_or_tar.gz_file,repos=NULL) from the R command line.

RStudio), then there generally is an option in the menu to install R packages from a local file. There are several ways in which you can do this:

Install ASReml-R, the R package that is used to interface ASReml from R.

On a Mac, I'd install it in /Applications/asreml3. Under Linux, I usually install it under /usr/local/asreml3, and create a symbolic from /usr/local/asreml3/bin/asreml.sh to /usr/local/bin/asreml.

ASREML R PACKAGE SOFTWARE

This software will need to be licensed to run, which is described below.

Install ASReml, the stand-alone software.

Make sure you have the version that goes with your operating systems (Windows, Mac, Linux 32 or 64bit).

ASREML R PACKAGE DOWNLOAD

Then, download ASReml and ASReml-R from.You will need your login credentials later.